PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_8.288
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family FAR1
Protein Properties Length: 847aa    MW: 96949.3 Da    PI: 7.0518
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_8.288genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR185.11.1e-2688190191
                         FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk............tekerrtraetrtgCkaklkvkk 70 
                                  +fY+eYA+++GF++ +++s++sk+++e+++++f Cs++g+++e +k+             e++  +r+  +t+Cka+++vk+
  evm.model.supercontig_8.288  88 SFYQEYARSMGFNTAIQNSRRSKTSREFIDAKFACSRYGTKREYDKSfnrprarqnkqdPENTTGRRSCAKTDCKASMHVKR 169
                                  5*******************************************9999999988876554555558999************* PP

                         FAR1  71 ekdgkwevtkleleHnHelap 91 
                                  + dgkw+++++++eHnHel p
  evm.model.supercontig_8.288 170 KPDGKWVIHSFVKEHNHELLP 190
                                  ******************975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.4E-2488190IPR004330FAR1 DNA binding domain
PfamPF105511.8E-27288380IPR018289MULE transposase domain
PROSITE profilePS509668.815568604IPR007527Zinc finger, SWIM-type
SMARTSM005753.6E-6579606IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009585Biological Processred, far-red light phototransduction
GO:0010218Biological Processresponse to far red light
GO:0042753Biological Processpositive regulation of circadian rhythm
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 847 aa     Download sequence    Send to blast
MDIDLRLPSG EQCKEDEDAN GIDNMLDAEE KLHNGDLEGG KIVDVGADVH AENGGHLNSS  60
MADMVFKEDM NLEPLSGMEF ESHGEAYSFY QEYARSMGFN TAIQNSRRSK TSREFIDAKF  120
ACSRYGTKRE YDKSFNRPRA RQNKQDPENT TGRRSCAKTD CKASMHVKRK PDGKWVIHSF  180
VKEHNHELLP AQAVSEQTRK MYAAMARQFA EYKNVVGLKN DPKNPFDKGR NLALEGGDVE  240
IFLDFLTQMQ NLNSNFFYAM DLGEDQRLKN VFWVDAKSRH DYSNFCDVVS FDTAYIRNKY  300
KMPLALFVGV NQHYQFMLLG CALLSDETVA TVSWLMQIWL KAMGGQAPKV IITDQDKAMK  360
SVIPEVFPNA HHCFFLWHVL GKVSENLGHV IKQQENFMAK FEKCIYRSWT DEEFGRRWWK  420
ILDRFGLKED EWMQSLYEDR RKWAPAYMTN VFLAGMSTVQ RSESVNSSFD KYVHKKTTVQ  480
EFVKQYEAIL QDRYEEEAKA HSDTWNKQPT LKSPSPFEKS VSGVYTHAVF KKFQVEVLGA  540
VACHPKRESQ DGASFIFRVQ DFEKNQDFIV TWNEMKPEVS CICRLYEYKG YLCRHSMIVL  600
QICGLSAIPS QYILKRWTKD AKSRHFLGEE SEQVQTRLQR YNDLCQRAMK LSEEASLSQD  660
SYNIAFRALE EALENCVGVN TSNKSPTEAV ASPTHGLISI EEDNQSRSMS KTNKKKNPTK  720
KRKTNSEQEV MTVGAPDSIQ QMDKLSPRTV TLDGYYGAQQ SVPGMVQLNL MAPTRDSYYG  780
NQQTIQGLGQ LNSIAPSHDG YYSAQQSMHG LGQMDFFRTP AGFTYGIRED PNVRTAQLHE  840
EASRHA*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00078ChIP-seqTransfer from AT3G22170Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006481370.10.0PREDICTED: protein FAR-RED ELONGATED HYPOCOTYL 3 isoform X1
SwissprotQ9LIE50.0FHY3_ARATH; Protein FAR-RED ELONGATED HYPOCOTYL 3
TrEMBLM5WR230.0M5WR23_PRUPE; Uncharacterized protein
STRINGVIT_03s0017g01780.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM11826253
Representative plantOGRP1057657
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22170.20.0far-red elongated hypocotyls 3